snpExample: SNP example

In thoree/mut2: Mutation stuff

SNP example

Description

The three reversible transformations and exact

Usage

snpExample(mutmat, afreq = NULL, check = TRUE, adjust = TRUE)

Arguments

mutmat	A mutation matrix.
afreq	A vector with allele frequencies
check	Logical
adjust	Logical

Value

Balanced mutation matrix. The expected mutation rate of the balanced matrix is returned as 'rate'.

Author(s)

Thore Egeland

Examples

library(pedmut)
n = 2
p = c("1" = 0.2, "2" = 0.8)#'
m = rbind(c(0.997, 0.003), c(0.003, 0.997))
mutmat = mutationMatrix("custom", matrix  = m, afreq = p, alleles = 1:2)
res = snpExample(mutmat, afreq = p, adjust = FALSE)

thoree/mut2 documentation built on June 11, 2025, 4:02 p.m.