ibd1.parental: Estimates for a pair of non-inbred individuals the...

In thoree/mut2: Reversible mutation matrices and pairwise likelihood ratios

Estimates for a pair of non-inbred individuals the probabilities of parental origin when IBD is 1

Description

Assume IBD is 1 for a pair of non-inbred individuals. The function estimates the probabilities of the four possible combinations of parental origin: (i) paternal-paternal, (ii) paternal-maternal, (iii) maternal-paternal and (iv) maternal-maternal.

Usage

ibd1.parental(x, id.pair, Nsim, cM = 10000, verbose = FALSE)

Arguments

x	A 'ped' object.
id.pair	Integer vector of length 2 giving the pair of individuals.
Nsim	Integer. The number of simulations.
cM	Double. The length of the 'uniformMap'.
verbose	Logical.

Value

The averaged values.

Author(s)

Magnus Dehli Vigeland and Thore Egeland.

Examples

library(ibdsim2)
x = doubleFirstCousins()
ids = leaves(x)
ibd1.parental(x, ids, 10)

thoree/mut2 documentation built on May 16, 2023, 7:56 p.m.