stepwiseReversible: Reversible stepwise mutation model

In thoree/mut2: Reversible mutation matrices and pairwise likelihood ratios

Reversible stepwise mutation model

Description

Reversible stepwise mutation model

Usage

stepwiseReversible(alleles, afreq, rate, range)

Arguments

alleles	A character vector with allele labels.
afreq	A numeric vector of allele frequencies.
rate	A numeric mutation rate.
range	A positive number.

Details

The approach of Dawid el al. (SJS, 2001) is implemented.

Value

A reversible stepwise mutation model with expected mutation rate equal input rate.

Author(s)

Thore Egeland.

Examples

R = stepwiseReversible(alleles = 1:3, afreq = c(0.2, 0.3,  0.5), rate = 0.001, range = 0.1)

thoree/mut2 documentation built on May 16, 2023, 7:56 p.m.