API for tidymass/metid
Metabolite identification based on MS1 and MS2 spectra
| Global functions | |
|---|---|
| .onAttach | Source code |
| annotate_metabolites | Man page Source code |
| annotate_metabolites_mass_dataset | Man page Source code |
| annotate_peaks_mz_rt_ms2 | Man page Source code |
| annotate_single_peak_mass_dataset | Man page Source code |
| bestloess | Source code |
| bestpoly | Source code |
| calculate_confidence_level | Man page |
| calculate_dotproduct | Man page Source code |
| calculate_ms2_matching_score | Man page Source code |
| calculate_mz_match_score | Man page |
| calculate_rt_match_score | Man page |
| calculate_total_score | Man page |
| check_adduct_table | Man page Source code |
| check_database | Man page Source code |
| check_mass_dataset | Man page Source code |
| check_ms1_ms2_info | Man page Source code |
| check_parameters4annotate_metabolites | Man page Source code |
| check_parameters4calculate_total_score | Man page Source code |
| colnames.databaseClass | Man page Source code |
| construct_database | Man page Source code |
| construct_massbank_database | Man page Source code |
| construct_mona_database | Man page |
| correct_database_rt | Man page Source code |
| correct_rt | Source code |
| databaseClass-class | Man page |
| dim.databaseClass | Man page Source code |
| extract_database_name | Man page Source code |
| extract_ms1_database | Man page Source code |
| extract_ms1_info | Man page Source code |
| extract_ms2_database | Man page Source code |
| extract_ms2_info | Man page |
| filter | Man page |
| filter.databaseClass | Source code |
| filter_adducts | Man page |
| filter_identification | Man page |
| getIdentificationTable2 | Man page |
| getMS2spectrum | Man page Source code |
| get_extension | Source code |
| get_iden_info | Man page Source code |
| get_identification_table | Man page |
| get_identification_table_all | Man page |
| get_ms2_spectrum | Man page Source code |
| get_ms2_spectrum_from_object | Man page |
| get_parameters | Man page Source code |
| get_parameters_metid | Man page Source code |
| hilic.neg | Man page |
| hilic.pos | Man page |
| identify_metabolite_all | Man page |
| identify_metabolites | Man page |
| identify_metabolites_params | Man page |
| identify_ms2_only | Man page Source code |
| identify_peak | Man page Source code |
| identify_single_peak | Man page |
| invert | Source code |
| is_attached | Source code |
| load_adduct_table | Man page |
| match_ms2_fragments | Man page Source code |
| match_ms2_temp | Man page |
| metIdentification | Man page Source code |
| metIdentify | Man page |
| metIdentifyClass-class | Man page |
| metIdentify_mass_dataset | Man page Source code |
| metid | Man page Source code |
| metid_attach | Source code |
| metid_conflict_message | Source code |
| metid_conflicts | Man page Source code |
| metid_core_unloaded | Source code |
| metid_logo | Man page Source code |
| metid_package_version | Source code |
| metid_packages | Man page Source code |
| ms2_plot_mass_dataset | Man page Source code |
| ms2plot | Man page |
| msDatabase_hilic0.0.2 | Man page |
| msDatabase_rplc0.0.2 | Man page |
| msg | Source code |
| mzIdentify | Man page Source code |
| mzIdentifyParam | Man page Source code |
| mzIdentify_mass_dataset | Man page Source code |
| ncol.databaseClass | Man page Source code |
| nrow.databaseClass | Man page Source code |
| orbitrap_database0.0.3 | Man page |
| plotMS2match | Source code |
| plot_ms2_matching | Man page Source code |
| readMGF | Man page |
| readMSP | Man page |
| readMSP_MoNA | Man page |
| readMZXML | Man page |
| readTable | Source code |
| read_mgf_experiment | Man page |
| read_mgf_gnps | Man page Source code |
| read_mgf_mona | Man page |
| read_msp | Man page |
| read_msp_database | Man page |
| read_msp_gnps | Man page |
| read_msp_mona | Man page |
| reexports | Man page |
| remove_impossible_annotations | Man page |
| remove_noise | Man page Source code |
| rp.neg | Man page |
| rp.pos | Man page |
| same_library | Source code |
| snyder_database_hilic0.0.3 | Man page |
| snyder_database_rplc0.0.3 | Man page |
| style_grey | Source code |
| summary_annotation_table | Man page Source code |
| text_col | Source code |
| trans_to_new_style | Man page |
| which_has_identification | Man page |
| write_mgf_gnps | Man page Source code |
| write_mgf_massbank | Man page Source code |
| write_mgf_mona | Man page Source code |
| write_msp | Man page |
| write_msp_gnps | Man page Source code |
| write_msp_massbank | Man page Source code |
| write_msp_mona | Man page Source code |
