Files in tidymass/metid
Metabolite identification based on MS1 and MS2 spectra
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/1_metid_logo.R
R/2_attach.R
R/3_conflicts.R
R/4_utils.R
R/5_global_variables.R
R/annotate_metabolites_mass_dataset.R
R/annotate_single_peak_mass_dataset.R
R/construct_database.R
R/construct_massbank_database.R
R/construct_mona_database.R
R/data.R
R/databaseClass-methods.R
R/deprecated_metIdentify4all.R
R/filter_databaseClass.R
R/get_identification_table.R
R/get_identification_table_all.R
R/identify_metabolites.R
R/identify_metabolites_for_multiple_database.R
R/identify_ms2_only.R
R/metIdentifyClass-methods.R
R/metIdentify_mass_dataset.R
R/metid.R
R/ms2_plot_mass_dataset.R
R/mzIdentify_mass_dataset.R
R/output_for_other_database.R
R/read_write_mgf.R
R/read_write_msp.R
R/read_write_mzxml.R
R/rtCorrection.R
R/single_peak_identification.R
R/summary-databaseClass.R
R/tools4MetaboliteIdentification.R
R/zzz.R
README.md
_pkgdown.yml
data/.DS_Store
data/hilic.pos.rda
data/hilic_neg.rda
data/msDatabase_hilic0.0.2.rda
data/msDatabase_rplc0.0.2.rda
data/orbitrap_database0.0.3.rda
data/rp.neg.rda
data/rp.pos.rda
data/snyder_database_hilic0.0.3.rda
data/snyder_database_rplc0.0.3.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
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inst/.DS_Store
inst/extdata/batch.design.csv
inst/ms1_peak/ms1.peak.table.csv
inst/ms2_data/QC1_MSMS_NCE25.mgf
inst/rstudio/addins.dcf
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man/.DS_Store
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man/annotate_single_peak_mass_dataset.Rd
man/construct_database.Rd
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man/construct_mona_database.Rd
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man/figures/Figure_1.png
man/figures/IS_table.PNG
man/figures/Screen Shot 2020-03-30 at 1.55.53 PM.png
man/figures/Screen Shot 2020-03-30 at 10.48.10 PM.png
man/figures/Screen Shot 2020-03-30 at 5.51.02 PM.png
man/figures/Screen Shot 2020-03-30 at 7.05.35 PM.png
man/figures/Screen Shot 2020-03-30 at 7.38.48 PM.png
man/figures/Screen Shot 2020-03-30 at 9.49.16 PM.png
man/figures/Screen Shot 2021-02-26 at 9.21.32 PM.png
man/figures/Screen Shot 2021-02-26 at 9.22.52 PM.png
man/figures/Screen Shot 2021-12-24 at 9.28.18 PM.png
man/figures/compound_information.PNG
man/figures/data_organization_for_metabolite_identification.PNG
man/figures/database_construction.png
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man/filter_adducts.Rd
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man/getMS2spectrum.Rd
man/get_iden_info.Rd
man/get_identification_table.Rd
man/get_identification_table_all.Rd
man/get_ms2_spectrum.Rd
man/get_ms2_spectrum_from_object.Rd
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man/get_parameters_metid.Rd
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man/metIdentify_mass_dataset.Rd
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man/msDatabase_hilic0.0.2.Rd
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man/read_msp_database.Rd
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man/read_msp_mona.Rd
man/reexports.Rd
man/rp.neg.Rd
man/rp.pos.Rd
man/snyder_database_hilic0.0.3.Rd
man/snyder_database_rplc0.0.3.Rd
man/summary-databaseClass.Rd
man/summary_annotation_table.Rd
man/trans_to_new_style.Rd
man/which_has_identification.Rd
man/write_mgf_gnps.Rd
man/write_mgf_massbank.Rd
man/write_mgf_mona.Rd
man/write_msp_gnps.Rd
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man/write_msp_mona.Rd
metid.Rproj
pkgdown/favicon/apple-touch-icon-120x120.png
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tests/testthat.R
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vignettes/.DS_Store
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vignettes/Version0_9_2.Rmd
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vignettes/database_construction.Rmd
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vignettes/work_with_mass_dataset.Rmd
