fmd: Veterinary foot-and-mouth disease outbreak data

In tilmandavies/sparr: Spatial and Spatiotemporal Relative Risk

Veterinary foot-and-mouth disease outbreak data

Description

Data of the spatial locations and time of farms infected by veterinary foot-and-mouth disease in the county of Cumbria, UK, over a course of nearly 250 days between February and August in 2001. There are 410 infected farms (the cases), and 1866 uninfected farms (the controls). The data have been jittered and randomly thinned by an unspecified amount to preserve anonymity.

Format

fmd is a named list with two members:

$cases

An object of class ppp giving the spatial locations of the 410 infected farms within a polygonal study region representing the county of Cumbria. The marks component of this object contain the integer day of infection (from beginning of study period).

$controls

An object of class ppp defined over the same spatial study region with the locations of the 1866 uninfected farms.

Acknowledgements

The Animal and Plant Health Agency (APHA), UK, provided permission to use this dataset.

References

Fernando, W.T.P.S. and Hazelton, M.L. (2014), Generalizing the spatial relative risk function, Spatial and Spatio-temporal Epidemiology, 8, 1-10.

Keeling M, Woolhouse M, Shaw D, Matthews L, Chase-Topping M, Haydon D, et al. (2001), Dynamics of the 2001 UK foot and mouth epidemic: stochastic dispersal in a heterogeneous landscape, Science, 294, 813-817.

Lawson A, Zhou H. (2005), Spatial statistical modeling of disease outbreaks with particular reference to the UK foot and mouth disease (FMD) epidemic of 2001, Preventative Veterinary Medicine, 71, 141-156.

Examples

data(fmd)
summary(fmd$cases)
summary(fmd$controls)

oldpar <- par(mfrow=c(1,2))
plot(fmd$cases)
plot(fmd$controls)
par(oldpar)

tilmandavies/sparr documentation built on July 8, 2024, 2:57 p.m.