do_sdreport: Add TMB sdreport object to WHAM model

In timjmiller/wham: Woods Hole Assessment Model (WHAM)

Add TMB sdreport object to WHAM model

Description

Runs TMB::sdreport and adds the object to the fitted (and projected) model list. E.g., fit$sdrep.

Usage

do_sdreport(
  model,
  save.sdrep = TRUE,
  TMB.bias.correct = FALSE,
  TMB.jointPrecision = FALSE
)

Arguments

model	a fitted WHAM model object returned by fit_wham or project_wham.
save.sdrep	T/F, save the full TMB::sdreport object? If FALSE, only save summary.sdreport to reduce model object file size. Default = TRUE.
TMB.bias.correct	T/F whether to use the bias.correct feature of TMB::sdreport. Default = FALSE.
TMB.jointPrecision	T/F whether to return the joint precision matrix for the fixed and random effects from TMB::sdreport. Default = FALSE.

See Also

fit_wham, project_wham

timjmiller/wham documentation built on Feb. 4, 2025, 10:31 p.m.