plot_wham_output: Plot WHAM output

In timjmiller/wham: Woods Hole Assessment Model (WHAM)

Plot WHAM output

Description

Generates many output plots and tables for a fit WHAM model.

Usage

plot_wham_output(
  mod,
  dir.main = getwd(),
  out.type = "html",
  res = 72,
  plot.opts = NULL
)

Arguments

mod	output from fit_wham
dir.main	character, directory to save plots to (default = getwd())
out.type	character, either 'html', 'pdf', or 'png' (default = 'html')
res	resolution to save .png files (dpi)
plot.opts	(optional) list of plot modifications

Details

out.type = 'html' (default) makes a html file for viewing plot .png files and html tables of parameter estimates in a browser. out.type = 'pdf' makes one pdf file of all plots and tables. out.type = 'png' creates a subdirectory 'plots_png“ in dir.main and saves .png files within. out.type = 'pdf' or 'png' makes LaTeX and pdf files of tables of parameter estimates. (tabs: 'input data', 'diagnostics', 'results', 'ref_points', 'retro', and 'misc').

plot.opts holds optional arguments to modify plots:

$ages.lab

Character vector, will change age labels in plots (default is 1:n.ages).

$font.family

Font family, e.g. "Times".

$browse

T/F whether to open the html file in a browser. Default = T.

Plot functions are located in wham_plots_tables.R Table function is located in par_tables_fn.R

See Also

fit_wham, wham_html, wham_plots_tables

Examples

## Not run: 
data("input4_SNEMAYT") # load fit wham model
mod <- fit_wham(input4_SNEMAYT)
plot_wham_output(mod)

## End(Not run)

timjmiller/wham documentation built on Feb. 4, 2025, 10:31 p.m.