run_glmeiv_precomputation: Run GLM-EIV precomputation
In timothy-barry/glmeiv: Implements the GLM-EIV model and method
View source: R/at_scale_em_algo_functs.R
run_glmeiv_precomputation R Documentation
Run GLM-EIV precomputation
Description
Runs a precomputation on a gene or gRNA.
Usage
run_glmeiv_precomputation(y, covariate_matrix, offset, fam)
Arguments
y
a vector of gene or gRNA expressions
covariate_matrix
the matrix of technical factors
offset
a vector of offsets, generally log library size
fam_str
a string specifying the family, currently either "Negative Binomial" or "poisson"
Value
a list containing (i) estimated theta (in NB case only), (ii) fitted values, (iii) fitted intercept term, (iv) covariate_coef terms
timothy-barry/glmeiv documentation built on Jan. 30, 2024, 3:46 p.m.
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View source: R/at_scale_em_algo_functs.R
| run_glmeiv_precomputation | R Documentation |
Run GLM-EIV precomputation
Description
Runs a precomputation on a gene or gRNA.
Usage
run_glmeiv_precomputation(y, covariate_matrix, offset, fam)
Arguments
y |
a vector of gene or gRNA expressions |
covariate_matrix |
the matrix of technical factors |
offset |
a vector of offsets, generally log library size |
fam_str |
a string specifying the family, currently either "Negative Binomial" or "poisson" |
Value
a list containing (i) estimated theta (in NB case only), (ii) fitted values, (iii) fitted intercept term, (iv) covariate_coef terms
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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