Man pages for tkostas/komics
Tools to analyze omics data
| above_threshold | Calculate number of observations above a certain threshold |
| above_threshold_vec | Above_threshold_vec |
| add_groups_col | Add group names based on experiment name |
| add_key | Add key column in the begining of your dataframe. |
| append_cols_df | Append extra columns to a dataframe |
| calc_aov_padj | Perform ANOVA, calculate p-values and adjust for multiple... |
| calc_CV_vec | Calculate CV for one vector |
| calc_exp_df | Calculate exponential values from a dataframe |
| calc_exp_vec | Calculate exponential base^x from a vector |
| calc_fold_change_df | Calculate fold change |
| calc_kruskal_test | Perform Kruskal-Wallis rank sum test in multiple rows and... |
| calc_log2_df | Calculate log2 values in a dataframe |
| calc_log2_vec | Calculate log2 from a vector |
| calc_means_df | Calculate means |
| calc_row_frequency | Calculate row frequencies |
| calc_TIC | Calculate sum of peptide intensities |
| calc_ttest_padj | Perform t-test and adjust p-values |
| convert_to_df | Convert selected values from a dataframe |
| drop_columns | Remove columns from a dataframe |
| extract_entries | Extract the entries of a dataframe that match specific rules |
| get_col_indexes | Get column indexes of a dataframe |
| HDX_ltseries_uptake_ratio | Calculate deuterioum uptake ration between the multiple time... |
| kwd_enrichment | Test for keyword enrichment in the differentially... |
| kwd_enrichment_multi | Keyword enrichment for multiple categories |
| move_columns | Move columns in a dataframe |
| norm_to_max | Normalize rows to the maximum value |
| over_under | Label each row based on specific rules |
| plot_bar_list | Plot frequencies in a barplot (use in combination with... |
| plot_kwd_bars | Plot keywords after enrichment test as bargraph |
| plot_kwd_lines | Plot keywords after enrichment test as lines |
| plot_volc | Create volcano plot |
| scale_rows | Scale rows |
