API for tnaake/msQC
MsQuality - Quality metric calculation from Spectra and MsExperiment objects
| Global functions | |
|---|---|
| .rtOrderSpectra | Man page Source code |
| Lee_2019 | Man page |
| Lee_2019_meta_vals | Man page |
| MsQuality | Man page |
| MsQuality-package | Man page |
| areaUnderTic | Man page Source code |
| areaUnderTicRtQuantiles | Man page Source code |
| calculateMetrics | Man page Source code |
| calculateMetricsFromMsExperiment | Man page Source code |
| calculateMetricsFromOneSampleSpectra | Man page Source code |
| calculateMetricsFromSpectra | Man page Source code |
| chromatographyDuration | Man page Source code |
| extentIdentifiedPrecursorIntensity | Man page Source code |
| meanCharge | Man page Source code |
| medianCharge | Man page Source code |
| medianPrecursorMz | Man page Source code |
| medianTicOfRtRange | Man page Source code |
| medianTicRtIqr | Man page Source code |
| meta | Man page |
| msSignal10xChange | Man page Source code |
| msexp_hilic | Man page |
| msexp_rplc | Man page |
| mzAcquisitionRange | Man page Source code |
| numberEmptyScans | Man page Source code |
| numberSpectra | Man page Source code |
| plotMetric | Man page Source code |
| plotMetricTibble | Man page Source code |
| precursorIntensityMean | Man page Source code |
| precursorIntensityQuartiles | Man page Source code |
| precursorIntensityRange | Man page Source code |
| precursorIntensitySd | Man page Source code |
| qualityMetrics | Man page Source code |
| ratioCharge1over2 | Man page Source code |
| ratioCharge3over2 | Man page Source code |
| ratioCharge4over2 | Man page Source code |
| rtAcquisitionRange | Man page Source code |
| rtIqr | Man page Source code |
| rtIqrRate | Man page Source code |
| rtOverMsQuarters | Man page Source code |
| shinyMsQuality | Man page Source code |
| sps_hilic | Man page |
| sps_rplc | Man page |
| ticQuartersRtFraction | Man page Source code |
| ticQuartileToQuartileLogRatio | Man page Source code |
| transformIntoMzQC | Man page Source code |
| vals | Man page |
