Files in tnaake/msQC
MsQuality - Quality metric calculation from Spectra and MsExperiment objects
.Rbuildignore
.gitattributes
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
R/Lee2019-data.R
R/Lee2019_meta_vals-data.R
R/function_Spectra_metrics.R
R/function_Spectra_qualityMetrics.R
R/function_calculateMetrics_from_Spectra.R
R/function_visualizations.R
README.md
data/Lee2019.RData
data/Lee_2019_meta_vals.RData
inst/NEWS.md
inst/scripts/Lee2019-data-source.R
man/Lee_2019.Rd
man/Lee_2019_meta_vals.Rd
man/MsQuality-package.Rd
man/areaUnderTic.Rd
man/areaUnderTicRtQuantiles.Rd
man/calculateMetrics.Rd
man/calculateMetricsFromMsExperiment.Rd
man/calculateMetricsFromOneSampleSpectra.Rd
man/calculateMetricsFromSpectra.Rd
man/chromatographyDuration.Rd
man/dot-rtOrderSpectra.Rd
man/extentIdentifiedPrecursorIntensity.Rd
man/meanCharge.Rd
man/medianCharge.Rd
man/medianPrecursorMz.Rd
man/medianTicOfRtRange.Rd
man/medianTicRtIqr.Rd
man/msSignal10xChange.Rd
man/mzAcquisitionRange.Rd
man/numberEmptyScans.Rd
man/numberSpectra.Rd
man/plotMetric.Rd
man/plotMetricTibble.Rd
man/precursorIntensityMean.Rd
man/precursorIntensityQuartiles.Rd
man/precursorIntensityRange.Rd
man/precursorIntensitySd.Rd
man/qualityMetrics.Rd
man/ratioCharge1over2.Rd
man/ratioCharge3over2.Rd
man/ratioCharge4over2.Rd
man/rtAcquisitionRange.Rd
man/rtIqr.Rd
man/rtIqrRate.Rd
man/rtOverMsQuarters.Rd
man/shinyMsQuality.Rd
man/ticQuartersRtFraction.Rd
man/ticQuartileToQuartileLogRatio.Rd
man/transformIntoMzQC.Rd
tests/testthat.R
tests/testthat/test_function_Spectra_metrics.R
tests/testthat/test_function_Spectra_qualityMetrics.R
tests/testthat/test_function_calculateMetrics_from_Spectra.R
tests/testthat/test_function_visualizations.R
vignettes/MsQuality-citations.bib
vignettes/MsQuality.Rmd
