Description Usage Arguments Details Value Author(s) Examples
Compute QC adjusted matrices
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obj |
metaboSet object |
what |
Which matrix to use |
Samp2Corr |
List of Sids to be corrected |
Var2Corr |
List of Analyte used for correction |
lQC |
List of QC Sids |
nminQC |
Number of non-missing QC for each variables. Default: 3 |
propNNA |
Proportion of non-missing allowed in the QC samples. Default: 0.5 |
lPcs |
Vector of PCs to be investigated. Default: 1:2 |
outfile |
Optional PDF file to dum p the plots |
doplot |
Do plots? |
Date2use |
Column name in obj$File to be used in the calculation |
complete |
If any Sid not in Samp2Corr or Analyte in Var2Corr excluded or missing. nothing: former data are used in place of the new data, NA: new data replaced by NA, remove: corresponding rows/columns are excluded |
ipc |
PC used for adjusting |
imod |
Model used for adjusting: 1, linear 2, quadratic 3, order 3 4, spline |
verbose |
Expanded output |
This is still a little bit too experimental
Matrix if ipc and imod specified or the prcomp object
David Enot david.enot@gustaveroussy.fr
1 | ## TO DO !!!
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