Description Usage Arguments Value Author(s) Examples
Create KEGG map from object
1 | mapSetKegg(obj,outfile=NULL, cols=NULL,sizes=4,mixcol="grey70",ftsize=16,conv2pdf=FALSE)
|
obj |
metaboSet object |
outfile |
File to save |
cols |
Colors used for each method in the object |
sizes |
Relative size for each node |
mixcol |
If null, mixing colors is done for entries in several methods |
ftsize |
Size of the label |
conv2pdf |
Convert SVG to PDF with Inkscape: command line |
SVG text
David Enot david.enot@gustaveroussy.fr
1 2 3 4 5 6 7 8 9 10 | ## Not run:
(testfiles=list.files(system.file( package = "GRMeta"),pattern = "txt$",full.names = TRUE))
lcdata=loadAgilentData(ifile =testfiles[1],params = list(AssayName="lc"))
gcdata1=loadAgilentData(ifile =testfiles[2],params = list(AssayName="gc"))
finaldata=mergeSet(lcdata,gcdata1)
mapSetKegg(finaldata,outfile="myKegg.svg")
## End(Not run)
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