paramsParsing: Default parameters for parsing Agilent text files
In tonedivad/GRMeta: Processing MetX data

Description Usage Arguments Author(s) See Also Examples

Default parameters for parsing Agilent text files.

paramsParsing(AssayName = "myassay", FileCol = "Data File", TimeCol = "Acq. Date-Time", 
    ordering = TRUE, regTypes = "^([blBLQCcSTDstda]+)_.*", NameClean = c("_GCMRM", 
        "_MRM", "_DBAA"), checkNams = TRUE, Batch = NULL, nozeroscheck = NULL, 
    AnnotDB = AnnotationDB)

`AssayName`	Name of the method
`FileCol`	Name of the file column
`TimeCol`	Name of the file column
`ordering`	Reorder according to sample type and date of analysis
`regTypes`	Regular expression to extract sample type
`NameClean`	Strings being replaced from the filename in addition to .d and .D
`checkNams`	Verify analyte names (default call of `cleanMetaboNames`)
`Batch`	Optional batch name for fileinfos
`nozeroscheck`	Optional vector of data matrices for which <=0 are not replace by NA. Default=NULL: all matrices will be checked
`AnnotDB`	Annotation DB: if null, load `AnnotationDB`