R/GUSbase-package.R

In tpbilton/GUSbase: Genotyping Uncertainty with Sequencing Data: Base Package

##########################################################################
# Genotyping Uncertainty with Sequencing data - Base package (GUSbase)
# Copyright 2017-2024 Timothy P. Bilton <timothy.bilton@agresearch.co.nz>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.
#########################################################################
#
#' Genotyping Uncertainty with Sequencing data - Base package
#'
#' GUSbase is a package for analyzing high-throughput sequencing data via reference and alternate count information.
#' It forms the base to a number of other packages with specialised methods for analyzing high-throughput sequencing data:
#' \itemize{
#' \item{GUSMap: Genotyping Uncertainty with Sequencing data and linkage MAPping}
#' \item{GUSLD: Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium}
#' \item{GUSrelate: Genotyping Uncertainty with Sequencing data and RELATEdness}
#' }
#'
#' \tabular{ll}{ Package: \tab GUSbase\cr Type: \tab Package\cr Version: \tab
#' 0.2.3\cr Date: \tab 2024-01-24\cr License: \tab GPL 3\cr }
#'
#' @name GUSbase-package
#' @aliases GUSbase
#' @author Timothy P. Bilton, Maintainer: Timothy P. Bilton
#' <timothy.bilton@agresearch.co.nz>
# #' @references
# #' \insertAllCited{}
#' @keywords package
#' @importFrom Rdpack reprompt
#' @importFrom R6 R6Class
#' @importFrom foreach %dopar%
"_PACKAGE"