Files in tpq/propr

An R package to calculate proportionality and other measures for compositional data

NEWS.md OLDNEWS.md R/1-propr-OOP.R R/1-propr-help.R R/1-propr.R R/1a-propr-backend.R R/2-propd-OOP.R R/2-propd-help.R R/2-propd.R R/2a-propd-backend.R R/2b-propd-frontend.R R/2c-propd-experimental.R R/3-shared-getAdjacency.R R/3-shared-getCutoff.R R/3-shared-getMatrix.R R/3-shared-getRatios.R R/3-shared-getResults.R R/3-shared-graflex.R R/3-shared-updateCutoffs.R R/3-shared-updatePermutes.R R/3-shared-zero.R R/4-aldex2propr.R R/5-selectRatios.R R/5-selectReference.R R/9-global.R R/RcppExports.R README.Rmd README.md cran-comments.md data-raw/data-abs.R man/aldex2propr.Rd man/as_safe_matrix.Rd man/calculate_theta.Rd man/compute_iqlr.Rd man/countValuesBeyondThreshold.Rd man/getAdjacencyFDR.Rd man/getAdjacencyFstat.Rd man/getCutoffFDR.Rd man/getCutoffFstat.Rd man/getFdrRandcounts.propd.parallel.Rd man/getFdrRandcounts.propd.run.Rd man/getFdrRandcounts.propr.parallel.Rd man/getFdrRandcounts.propr.run.Rd man/getMatrix.Rd man/getMovingAverage.Rd man/getPermutedTheta.Rd man/getPermutedThetaMod.Rd man/getRatios.Rd man/getResults.Rd man/getSignificantResultsFDR.Rd man/getSignificantResultsFstat.Rd man/index_reference.Rd man/logratio.Rd man/logratio_with_alpha.Rd man/logratio_without_alpha.Rd man/marg.abs.Rd man/packageCheck.Rd man/pcor.bshrink.Rd man/progress.Rd man/propd.Rd man/propr.Rd man/ratios.Rd man/results_to_matrix.Rd man/runGraflex.Rd man/runNormalization.Rd man/runPostHoc.Rd man/search_tree.Rd man/selectRatios.Rd man/selectReference.Rd man/simple_zero_replacement.Rd man/updateCutoffs.Rd man/updatePermutes.Rd old_tests/testthat.R old_tests/testthat/test-Fstat.R old_tests/testthat/test-aldex2propr.R old_tests/testthat/test-getNormTheta.R old_tests/testthat/test-multiomic.R old_tests/testthat/test-propd.R old_tests/testthat/test-propr-parallel.R old_vignettes/a_introduction.Rmd old_vignettes/b_visualization.Rmd old_vignettes/d_advanced.Rmd old_vignettes/e_differential.Rmd old_vignettes/f_moderation.Rmd old_vignettes/g_questions.Rmd tests/testthat.R tests/testthat/test-GET-getMatrix.R tests/testthat/test-GET-getRatios.R tests/testthat/test-GRAFLEX.R tests/testthat/test-PROPD-theta.R tests/testthat/test-PROPD-weight.R tests/testthat/test-PROPR-backend.R tests/testthat/test-PROPR-clr-alr-vlr.R tests/testthat/test-PROPR-ivar.R tests/testthat/test-PROPR-pcor.R tests/testthat/test-PROPR-pcorbshrink.R tests/testthat/test-PROPR-pcorshrink.R tests/testthat/test-PROPR-phi-rho-phs-cor.R tests/testthat/test-RCPP-count.R tests/testthat/test-RCPP-ctzRcpp.R tests/testthat/test-RCPP-half2mat.R tests/testthat/test-RCPP-wtmRcpp-wtvRcpp.R tests/testthat/test-SHARED-getAdjacency-propd.R tests/testthat/test-SHARED-getAdjacency-propr.R tests/testthat/test-SHARED-getCutoff-propd.R tests/testthat/test-SHARED-getCutoff-propr.R tests/testthat/test-SHARED-getResults-propd.R tests/testthat/test-SHARED-getResults-propr.R tests/testthat/test-SHARED-updateCutoffs-propd.R tests/testthat/test-SHARED-updateCutoffs-propr.R tests/testthat/test-SHARED-updatepermutes.R tests/testthat/test-SHARED-zero.R