getAdjacencyFstat: Get Adjacency Matrix as indicated by F-statistics

In tpq/propr: An R package to calculate proportionality and other measures for compositional data

Get Adjacency Matrix as indicated by F-statistics

Description

This function gets the significant pairs, according to the F-statistics. Then it fills the adjacency matrix with 1 if pair is significant, otherwise 0. Note that it can only be applied to theta_d, as updateF only works for theta_d.

Usage

getAdjacencyFstat(object, pval = 0.05, fdr_adjusted = TRUE)

Arguments

object	A propd or propr object.
pval	A float value for the p-value. Default is 0.05.
fdr_adjusted	A boolean. If TRUE, use the the FDR- adjusted p-values. Otherwise, get significant pairs based on the theoretical F-statistic cutoff.

Value

An adjacency matrix.

tpq/propr documentation built on Feb. 3, 2025, 4:23 a.m.