runGraflex: Calculate odds ratio and FDR
In tpq/propr: An R package to calculate proportionality and other measures for compositional data
View source: R/3-shared-graflex.R
runGraflex R Documentation
Calculate odds ratio and FDR
Description
This function calls graflex for each
concept (i.e., column) in the database K.
Usage
runGraflex(A, K, p = 100, ncores = 1)
Arguments
A
An adjacency matrix.
K
A knowledge database where each row is a graph node
and each column is a concept.
p
An integer. The number of permutation.
Details
For each concept, this function calculates the odds ratio
and determines the false discovery rate (FDR) by counting
the number of the actual OR was greater or less than a
permuted OR.
tpq/propr documentation built on Feb. 3, 2025, 4:23 a.m.
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View source: R/3-shared-graflex.R
| runGraflex | R Documentation |
Calculate odds ratio and FDR
Description
This function calls graflex for each
concept (i.e., column) in the database K.
Usage
runGraflex(A, K, p = 100, ncores = 1)
Arguments
A |
An adjacency matrix. |
K |
A knowledge database where each row is a graph node and each column is a concept. |
p |
An integer. The number of permutation. |
Details
For each concept, this function calculates the odds ratio and determines the false discovery rate (FDR) by counting the number of the actual OR was greater or less than a permuted OR.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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