Man pages for treenet/treenetproc
Clean, Process and Visualize Dendrometer Data

append_lead_trail_na	Append Leading and Trailing NA's
axis_labels_period	Define Axis Labels Based on Period
calcdiff	Calculates Hourly Change in Data
calcflagmad	Define Outliers Based on Value Distribution
calcgroperiods	Calculate Growth for Different Time Periods
calcmax	Calculate Maximum
calcmissing	Calculates Percentages of Interpolated, Deleted and Missing...
calcshrinkexpparam	Calculate Phase Parameters
calctwdgro	Calculate TWD and GRO
check_data_L1	Check data_L1 Input
check_data_L2	Check data_L2 Input
check_date_period	Check Date Input for Period
check_datevec	Check Date Vector Input
check_delete	Check the Date Sequence in Delete
check_format	Check Format of Input Data
check_input_variables	Check all input variables automatically
check_logical	Check for Logical Input
check_missing	Check for Sensors with Missing Data
check_numeric	Check for Numeric Input
check_package	Check if Package is Installed
check_series	Checks Input of Series
check_ts	Check TS Column
corr_dendro_L1	Manually Correct Time-Aligned Dendrometer Data
corr_dendro_L2	Manually Correct Processed Dendrometer Data
createflagfragment	Create Flag for Small Data Fragments
createflagmad	Creates Flag for Outliers Based on Median Absolute Deviation
createflagout	Create Flag for Outliers
createfrostflag	Creates Flag for Potential Frost
creategapflag	Creates Flag for Gaps
createjumpflag	Creates Flag for Jumps in Data
create_temp_dummy	Create Dummy Temperature Dataset
deleteperiod	Deletes Data in Specified Period
dendro_data_L0	Raw Dendrometer Data in Long Format
dendro_data_L0_wide	Raw Dendrometer Data in Wide Format
dendro_data_L1	Time-aligned Dendrometer Data
dendro_data_L2	Cleaned Dendrometer Data
download_series	Download Series from Server
download_treenet	Download Dendrometer Data from TreeNet or Decentlab Server
executeflagout	Remove Outliers
executejump	Remove Jumps
fillintergaps	Interpolate Between Irregular and Regular Timesteps
fillintergaps_prec	Interpolate Precipitation Data Between Irregular and Regular...
fill_na	Fills NA's With Last Non-NA Value
fill_na_lead	Fills Trailing NA's With First Non-NA Value
findmaxmin	Find Maximum and Minimum in Time Window
forcejump	Force Jump in Data
format_input	Format Input Data
generatets	Generate Regular Time Stamps
get_decentlab	Generate Query for Data from Decentlab Server
grow_seas	Calculate the Start and End of the Growing Season
isdate	Check Date Format
last_values	Function to select last values
load_credentials	Load Credentials
passenv	Helper Function for Reso
phase_stats	Calculate Parameters of Shrinkage and Expansion Phases
pipe	Pipe operator
plot_density	Plot density of differences
plot_frost_period	Plot Frost Period
plot_gro_yr_print_vars	Plot Yearly Growth Curves and Print Variables
plot_interpol_points	Plot Interpolated Points
plot_L1	Plot L1 Data
plot_phase	Plot Phases
plot_proc_L2	Plot Changes Between Time-aligned and Cleaned Dendrometer...
plotting_L1	Plot Command to Plot L1 Data
plotting_proc_L2	Plot Command to Plot L2 Dendrometer Data
proc_dendro_L2	Clean Time-aligned Dendrometer Data
proc_L1	Time-align Raw Dendrometer or Temperature Data
proc_treenet	Process TreeNet Data to L1 or L2
removeconsec	Remove Consecutive Maxima or Minima
remove_lead_trail_na	Remove Leading and Trailing NA's
reso_check_L0	Check Time Resolution of L0 Input Data
reso_check_L1	Check Time Resolution of L1 Input Data
reversecorr	Reverses Wrong Corrections in Data
roundtimetoreso	Rounds Irregular Time Stamp to Regular
saveplotthr	Save Applied Cleaning Thresholds for Plotting
select_series	Select Series from Metadata File
select_temp_data	Select Reference Temperature Data for Selected Series
summariseflags	Summarise Flags
summariseflagscorr	Summarise Flags
temp_data_L0	Raw Temperature data
temp_data_L1	Time-aligned Temperature Data
treenetproc	treenetproc - Clean, process and visualize dendrometer data
tsalign	Time-Alignment of Measurements to Regular Time Intervals
ts_overlap_check	Check for Time Overlap Between Datasets