scNMTtoGR: take an scNMT CpG methylation file and read its coordinates...

Description Usage Arguments Value

View source: R/scNMTtoGR.R

Description

This function is primarily to Reduce(union, aBunchOfGRs) for aggregation

Usage

1
scNMTtoGR(filename, verbose = TRUE, is0based = FALSE, which = NULL, ...)

Arguments

filename

the file

verbose

squawk? (TRUE)

is0based

is it a UCSC file? (FALSE)

which

Optional instance of 'GRanges' or 'IntegerRangesList' (NULL)

...

Optional arguments, currently ignored

Value

1
     a GRanges with the tabix-derived coordinates, but no $score

trichelab/enmity documentation built on Sept. 8, 2020, 8:32 p.m.