inst/extdata/loadFullMeth.R
In trichelab/enmity: load scNMT data and test HDF5/DelayedArray/restfulSE behavior
# BiocManager::install("trichelab/enmity")
library(enmity)
library(HDF5Array) # for HDF5 loads/saves
library(BiocParallel) # for multiprocessing
BPMULTI <- MulticoreParam()
# catalog the extdata files for testing
meth_tsv <- list.files(patt="CpG.*.gz$")
meth_se <- mergeScNMT(meth_tsv, what="meth", BPPARAM=BPMULTI)
stopifnot(!all(is.na(getBeta(inmemSE))))
meth_hdf5 <- saveHDF5SummarizedExperiment(meth_se, dir="scNMT_meth", replace=T)
trichelab/enmity documentation built on Sept. 8, 2020, 8:32 p.m.
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# BiocManager::install("trichelab/enmity")
library(enmity)
library(HDF5Array) # for HDF5 loads/saves
library(BiocParallel) # for multiprocessing
BPMULTI <- MulticoreParam()
# catalog the extdata files for testing
meth_tsv <- list.files(patt="CpG.*.gz$")
meth_se <- mergeScNMT(meth_tsv, what="meth", BPPARAM=BPMULTI)
stopifnot(!all(is.na(getBeta(inmemSE))))
meth_hdf5 <- saveHDF5SummarizedExperiment(meth_se, dir="scNMT_meth", replace=T)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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