Man pages for trichelab/h5testR
Tests for HDF5-backed DNAme, RNAseq, and MultiAssayExperiment objects
| genomicFilesFromBeds | create a GenomicFiles from the results of sesamizeToBeds (or... |
| HMM_CpG_islands.hg38 | Hidden Markov Model (HMM) based CpG island boundaries for... |
| read.methdf5 | process an IDATs directly into an RGChannelSet backed by HDF5 |
| read.methdf5.sheet | process as sample sheet directly into an RGChannelSet backed... |
| sesamizeToBeds | process IDAT pairs directly into tabix'ed BED files using... |
| tabixedToGr | Scan Tabix'ed files into a merged GRangesList (for... |
| tabixFileListToGr | Scan a TabixFileList into a joint GRanges by union()'ing each... |
| tabixToGr | Scan a single Tabix'ed file's ranges (only!) into a GRanges... |
| verifyChannel | Verify that a channel of an HDF5 RGChannelSet matches its... |
| verifyRGsets | Verify that an RGChannelSet backed by HDF5 files matches an... |
