Description Usage Arguments Details Value
Modified from a prototype originally by Wanding Zhou (github.com/zwdzwd). One useful ... argument is yieldSize, e.g. yieldSize=1e4, to avoid wedging. Another useful ... argument is index, if not the usual tf.tbi scheme.
1 |
tf |
a tabix'ed file (either a character(1) or a TabixFile) |
verbose |
Provide feedback on which file is being read? (TRUE) |
is0based |
Are the intervals in the tabixed file 0-based? (TRUE) |
... |
other arguments to pass to Rsamtools::TabixFile() |
Beware: the parameter 'is0based' may be extremely important for your usage. It is a good idea to look at the returned GRanges object to ensure this.
a GRanges
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