Description Usage Arguments Value See Also Examples
View source: R/read.methdf5.sheet.R
For processing lists of IDATs, see read.methdf5
1 | read.methdf5.sheet(sheet, filepath = "my_h5_se", ...)
|
sheet |
a sample sheet, as from read.metharray.sheet |
filepath |
a directory in which to put the HDF5 data ("my_h5_se") |
... |
other arguments, passed to minfi:::read.metharray2 |
an HDF5-backed RGChannelSet
read.methdf5
1 2 3 4 5 6 7 8 9 | # cheezy 450k example
if (require("minfiData")) {
baseDir <- system.file("extdata", package = "minfiData")
sheet <- read.metharray.sheet(baseDir)
inCore <- read.metharray(basenames=sheet$Basename)
outOfCore <- read.methdf5.sheet(sheet)
stopifnot(identical(dim(inCore), dim(outOfCore)))
verifyRGsets(ram=inCore, hdf5=outOfCore)
}
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