Description Usage Arguments Value Note See Also Examples
Transform codes with any binary operator combination.
1 2 | cm_code.blank(x2long.obj, combine.code.list,
rm.var = NULL, overlap = TRUE)
|
x2long.obj |
An object from
|
combine.code.list |
A list of named character vectors of at least two code column names to combine. |
rm.var |
Name of the repeated measures column. |
overlap |
logical, integer or character of binary operator + integer. If TRUE finds the overlap. If FALSE finds anywhere any of the codes occur. If integer finds that exact combination of overlaps. If character must be a logical vector c(>, <, =<, =>, ==, !=) followed by an integer and wrapped with quotes. |
Returns a dataframe with transformed occurrences of supplied overlapping codes added.
For most jobs cm_code.transform
will
work. This adds a bit of flexibility in exclusion and
partial matching. The code column must be named
"code"
and your start and end columns must be
named "start"
and "end"
.
cm_range2long
,
cm_time2long
,
cm_df2long
,
cm_code.overlap
,
cm_code.combine
,
cm_code.exclude
,
cm_code.transform
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 | foo <- list(
AA = qcv(terms="1:10"),
BB = qcv(terms="1:2, 3:10, 19"),
CC = qcv(terms="1:3, 5:6")
)
foo2 <- list(
AA = qcv(terms="4:8"),
BB = qcv(terms="1:4, 10:12"),
CC = qcv(terms="1, 11, 15:20"),
DD = qcv(terms="")
)
(x <- cm_range2long(foo))
(z <- cm_range2long(foo, foo2, v.name="time"))
cm_code.transform(x, overlap.code.list=list(AB=qcv(AA, BB)))
cm_code.transform(x, combine.code.list = list(ALL=qcv(AA, BB, CC)))
cm_code.transform(x, overlap.code.list=list(AB=qcv(AA, BB)),
combine.code.list = list(ALL=qcv(AA, BB, CC)))
overlaps <- list(AB=qcv(AA, BB), ABC=qcv(AA, BB, CC))
cm_code.transform(z, overlaps, rm.var="time")
out1 <- cm_code.transform(z, overlaps,
exclude.code.list=list(AABB_no_CC = qcv(AA, BB, CC)), rm.var="time")
head(out1, 10)
#WITH cm_time2long
x <- list(
transcript_time_span = qcv(00:00 - 1:12:00),
A = qcv(terms = "2.40:3.00, 5.01, 6.02:7.00, 9.00"),
B = qcv(terms = "2.40, 3.01:3.02, 5.01, 6.02:7.00, 9.00,
1.12.00:1.19.01"),
C = qcv(terms = "2.40:3.00, 5.01, 6.02:7.00, 9.00, 17.01")
)
y <- list(
transcript_time_span = qcv(00:00 - 1:12:00),
A = qcv(terms = "2.40:3.00, 5.01, 6.02:7.00, 9.00"),
B = qcv(terms = "2.40, 3.01:3.02, 5.01, 6.02:7.00, 9.00,
1.12.00:1.19.01"),
C = qcv(terms = "2.40:3.00, 5.01, 6.02:7.00, 9.00, 17.01")
)
dat <- cm_time2long(x, y)
head(dat, 10)
out2 <- cm_code.transform(dat, list(P=qcv(A, B), Q=qcv(B, C), R=qcv(A, B, C)),
list(S=qcv(A, B), T=qcv(B, C), U=qcv(A, B, C)),
list(ABnoC = qcv(A, B, C)), rm.var="variable")
head(out2, 10)
|
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