Files in tsahota/NMproject
Script Based 'NONMEM' Model Development
.Rbuildignore
.covrignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
.travis.yml
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/NMproject-options.R
R/NMproject-package.R
R/Vectorize.R
R/addin-apps.R
R/apply_manual_edit.R
R/basic-ctl-manipulation.R
R/basic_methods.R
R/boot.R
R/cache.R
R/check_installation.R
R/covariate-explore.R
R/cran_note_handle.R
R/data_filter.R
R/decision.R
R/deprecated.R
R/derived-data-prep.R
R/developer-funs.R
R/directory-management.R
R/dollar_input.R
R/find-nonmem.R
R/import-code.R
R/init_funs.R
R/input_data.R
R/job_stats.R
R/low-level-ctl-handling-funs.R
R/make_OCC_every_dose.R
R/make_project.R
R/manual-edit.R
R/monitoring.R
R/nm-gettersetters.R
R/nm_diff.R
R/nm_object.R
R/nm_read_table.R
R/nm_render.R
R/nm_tran.R
R/nm_tree.R
R/nmsave.R
R/ofv.R
R/output_table.R
R/param-manipulate.R
R/plot_iter.R
R/post-run-summaries.R
R/prompt_overwrite.R
R/psn_style_scm.R
R/read_ext.R
R/rmd_to_vignette.R
R/run_nm.R
R/shiny-apps.R
R/show-file.R
R/sim-diagnostics.R
R/snippet_setup.R
R/stepwise-covariate.R
R/subroutine.R
R/system-hooks.R
R/text.R
R/todo.R
R/update_parameters.R
R/utils.R
R/with_temp_git_config.R
R/zzz.R
README.Rmd
README.md
_pkgdown.yml
appveyor.yml
codecov.yml
cran-comments.md
inst/extdata/CodeLibrary/DerivedData/THEOPP.csv
inst/extdata/CodeLibrary/Models/ADVAN1.mod
inst/extdata/CodeLibrary/Models/ADVAN1TRANS1.mod
inst/extdata/CodeLibrary/Models/ADVAN2.mod
inst/extdata/CodeLibrary/Models/ADVAN2TRANS1.mod
inst/extdata/CodeLibrary/Models/ADVAN3.mod
inst/extdata/CodeLibrary/Models/ADVAN3TRANS1.mod
inst/extdata/CodeLibrary/Models/ADVAN3TRANS3.mod
inst/extdata/CodeLibrary/Models/ADVAN4.mod
inst/extdata/CodeLibrary/Models/ADVAN4TRANS1.mod
inst/extdata/CodeLibrary/Models/ADVAN4TRANS3.mod
inst/extdata/CodeLibrary/Models/DES.mod
inst/extdata/CodeLibrary/Models/Emax_PRED.mod
inst/extdata/CodeLibrary/Models/NegBinomial.mod
inst/extdata/CodeLibrary/Models/Poisson.mod
inst/extdata/CodeLibrary/Models/TTE.mod
inst/extdata/CodeLibrary/Models/binary.mod
inst/extdata/CodeLibrary/Models/example.scm
inst/extdata/CodeLibrary/Models/pk1cmt_pop.cpp
inst/extdata/CodeLibrary/R/AUC.R
inst/extdata/CodeLibrary/R/convert.to.na.R
inst/extdata/CodeLibrary/R/covariate_summaries.R
inst/extdata/CodeLibrary/R/gof_ggplot.R
inst/extdata/CodeLibrary/R/gof_xpose.R
inst/extdata/CodeLibrary/R/group.factor.R
inst/extdata/CodeLibrary/R/locf.R
inst/extdata/CodeLibrary/R/rep_times.R
inst/extdata/CodeLibrary/R/snap.R
inst/extdata/CodeLibrary/Scripts/BinomRegMeta.R
inst/extdata/CodeLibrary/Scripts/deSolvePKsim.R
inst/extdata/CodeLibrary/Scripts/theoppStan.R
inst/extdata/CodeLibrary/SourceData/THEOPP.csv
inst/extdata/code_library_shiny/server.R
inst/extdata/code_library_shiny/ui.R
inst/extdata/examples/theopp/Models/ADVAN2.mod
inst/extdata/examples/theopp/Models/Readme.txt
inst/extdata/examples/theopp/Models/patches/patch-tarjinde-2021-11-17-08-52-52
inst/extdata/examples/theopp/R/AUC.R
inst/extdata/examples/theopp/Scripts/Readme.txt
inst/extdata/examples/theopp/Scripts/basic_boot.Rmd
inst/extdata/examples/theopp/Scripts/basic_gof.Rmd
inst/extdata/examples/theopp/Scripts/basic_ppc.Rmd
inst/extdata/examples/theopp/Scripts/basic_vpc.Rmd
inst/extdata/examples/theopp/Scripts/s01_make_data.Rmd
inst/extdata/examples/theopp/Scripts/s02_model_log.Rmd
inst/extdata/examples/theopp/Scripts/s03_cov_demo_prep.Rmd
inst/extdata/examples/theopp/Scripts/s04_covariate_modelling.Rmd
inst/extdata/examples/theopp/Scripts/s05_advanced_usage.Rmd
inst/extdata/examples/theopp/SourceData/Readme.txt
inst/extdata/examples/theopp/SourceData/THEOPP.csv
inst/extdata/overwrite_behaviour/server.R
inst/extdata/overwrite_behaviour/ui.R
inst/extdata/r.snippets
inst/extdata/shiny/server.R
inst/extdata/shiny/ui.R
inst/extdata/theopp.zip
inst/rmarkdown/templates/basic_boot/skeleton/skeleton.Rmd
inst/rmarkdown/templates/basic_boot/template.yaml
inst/rmarkdown/templates/basic_gof/skeleton/skeleton.Rmd
inst/rmarkdown/templates/basic_gof/template.yaml
inst/rmarkdown/templates/basic_ppc/skeleton/skeleton.Rmd
inst/rmarkdown/templates/basic_ppc/template.yaml
inst/rmarkdown/templates/basic_vpc/skeleton/skeleton.Rmd
inst/rmarkdown/templates/basic_vpc/template.yaml
inst/rmarkdown/templates/nm_general/skeleton/skeleton.Rmd
inst/rmarkdown/templates/nm_general/template.yaml
inst/rmarkdown/templates/nm_log/skeleton/skeleton.Rmd
inst/rmarkdown/templates/nm_log/template.yaml
inst/rstudio/addins.dcf
inst/rstudio/templates/project/make_project_template.dcf
inst/templates/README.Rmd
man/NMproject-package.Rd
man/NONMEM_version.Rd
man/add_mixed_param.Rd
man/add_remove_covs.Rd
man/append_nonmem_var.Rd
man/apply_manual_edit.Rd
man/as_nm_generic.Rd
man/as_nm_list.Rd
man/based_on.Rd
man/bind_covariate_results.Rd
man/block-omega-sigma.Rd
man/boot_to_csv.Rd
man/change_parent.Rd
man/check_installation.Rd
man/child.Rd
man/code_library.Rd
man/coef_widelong.Rd
man/comment_lines.Rd
man/completed_nm.Rd
man/cond_num.Rd
man/convert_to_simulation.Rd
man/cov_cov_plot.Rd
man/cov_forest_data.Rd
man/cov_forest_plot.Rd
man/covariance_matrix.Rd
man/covariance_plot.Rd
man/covariate_step_tibble.Rd
man/ctl_character.Rd
man/ctl_contents.Rd
man/ctl_list.Rd
man/ctl_path.Rd
man/data_filter_char.Rd
man/data_ignore_char.Rd
man/data_path.Rd
man/decision.Rd
man/delete_dollar.Rd
man/dollar.Rd
man/dollar_subroutine.Rd
man/exclude_rows.Rd
man/figures/NMproject_logo.R
man/figures/NMproject_logo.svg
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-maturing.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/figures/logo.svg
man/figures/pptworkflow.svg
man/fill_input.Rd
man/find_nonmem.Rd
man/gen_sim_path.Rd
man/git_cmd_available.Rd
man/git_hooks.Rd
man/grapes-f-greater-than-grapes.Rd
man/gsub_ctl.Rd
man/ignore.Rd
man/import.Rd
man/info_scripts.Rd
man/init_theta.Rd
man/input_data.Rd
man/insert_dollar.Rd
man/is_finished.Rd
man/is_full_path.Rd
man/is_nm.Rd
man/is_nmproject_dir.Rd
man/is_rstudio.Rd
man/is_successful.Rd
man/job_info.Rd
man/job_stats.Rd
man/job_time_spacing.Rd
man/kill_job.Rd
man/list_dirs.Rd
man/ls_code_library.Rd
man/ls_scripts.Rd
man/make_OCC_every_dose.Rd
man/make_boot_datasets.Rd
man/make_xv_datasets.Rd
man/map_nm.Rd
man/new_nm.Rd
man/nm.Rd
man/nm_create_analysis_project.Rd
man/nm_default_dirs.Rd
man/nm_default_fields.Rd
man/nm_diff.Rd
man/nm_dir.Rd
man/nm_getsetters.Rd
man/nm_getsetters_execution.Rd
man/nm_list_gather.Rd
man/nm_output.Rd
man/nm_output_path.Rd
man/nm_read_table.Rd
man/nm_render.Rd
man/nm_row.Rd
man/nm_summary.Rd
man/nm_tran.Rd
man/nm_tran_command.Rd
man/nm_tree.Rd
man/nmsave.Rd
man/nonmem_code_to_r.Rd
man/ofv.Rd
man/omega_matrix.Rd
man/output_table.Rd
man/overwrite_behaviour.Rd
man/parallel_execute.Rd
man/param_cov_diag.Rd
man/parent_run.Rd
man/pipe.Rd
man/plot_iter.Rd
man/plot_iter_data.Rd
man/plot_iter_dygraph.Rd
man/plot_iter_ggplot.Rd
man/ppc.Rd
man/psn_available.Rd
man/psn_check.Rd
man/psn_style_scm.Rd
man/read_derived_data.Rd
man/reexports.Rd
man/relative_path.Rd
man/remove_parameter.Rd
man/rename_parameter.Rd
man/rmd_to_vignettes.Rd
man/rr.Rd
man/run_all_scripts.Rd
man/run_dir_path.Rd
man/run_nm.Rd
man/run_nm_single.Rd
man/search_raw.Rd
man/setup_code_completion.Rd
man/setup_nm_demo.Rd
man/sge_parallel_execute.Rd
man/shiny_nm.Rd
man/show_ctl.Rd
man/show_out.Rd
man/simple_field.Rd
man/stage.Rd
man/start_manual_edit.Rd
man/status.Rd
man/status_table.Rd
man/subroutine.Rd
man/system_cmd.Rd
man/system_nm.Rd
man/system_nm_available.Rd
man/system_nm_default.Rd
man/system_nm_intern.Rd
man/tail_lst.Rd
man/target.Rd
man/temp_files.Rd
man/test_relations.Rd
man/update_parameters.Rd
man/valid_package_name.Rd
man/view_patch.Rd
man/wait_finish.Rd
man/wait_for.Rd
man/wipe_run.Rd
man/write_ctl.Rd
man/write_derived_data.Rd
tests/testthat.R
tests/testthat/test-basic.R
tests/testthat/test-child.R
tests/testthat/test-manual_edit.R
tests/testthat/test-new_nm.R
tests/testthat/test-parse_dirs.R
tests/testthat/test-subroutine.R
tests/testthat/test-theopp.R
tests/testthat/theopp.zip
vignettes/.gitignore
vignettes/articles/NMproject.Rmd
vignettes/articles/a01_config.Rmd
vignettes/articles/a02_analysis_directories.Rmd
vignettes/articles/a03_demo.Rmd
vignettes/articles/a04_code_library.Rmd
vignettes/articles/a05_core_object.Rmd
vignettes/articles/a06_execution.Rmd
vignettes/articles/a07_post_processing.Rmd
vignettes/articles/a08_covariate_modelling.Rmd
vignettes/articles/a09_advanced_topics.Rmd
vignettes/articles/a10_FAQ.Rmd
