Files in tschauer/HelpersforDESeq2
This is a collection of helper functions for DESeq2
.DS_Store
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
HelpersforDESeq2.Rproj
LICENSE
NAMESPACE
R/getResults.R
R/makeCountTable.R
R/makeGOTable.R
R/plotDens.R
R/plotGOBubbles.R
R/plotGOGraph.R
R/plotLegend.R
R/plotLog2FC.R
R/plotReadStats.R
R/plottingMA.R
R/plottingMAold.R
R/plottingPCA.R
R/setupDDS.R
R/setupDDSwith3wayInteraction.R
R/setupDDSwithInteraction.R
README.md
doc/Base_Graphics.Rmd
doc/Base_Graphics.html
doc/Explore_Counts.Rmd
doc/Explore_Counts.html
doc/Explore_Results.Rmd
doc/Explore_Results.html
doc/Setup_DESeq2.Rmd
doc/Setup_DESeq2.html
inst/.DS_Store
inst/extdata/IN1_GATCAGAT.ReadsPerGene.out.tab
inst/extdata/IP1_GGCTACAT.ReadsPerGene.out.tab
inst/extdata/L15_GTCCGCAC.ReadsPerGene.out.tab
inst/extdata/L20_GAGTGGAT.ReadsPerGene.out.tab
inst/extdata/L33_AGTCAACA.ReadsPerGene.out.tab
inst/extdata/L34_AGTTCCGT.ReadsPerGene.out.tab
inst/extdata/L35_ATGTCAGA.ReadsPerGene.out.tab
inst/extdata/L43_ATCACGAT.ReadsPerGene.out.tab
inst/extdata/L45_TTAGGCAT.ReadsPerGene.out.tab
inst/extdata/L46_ACAGTGAT.ReadsPerGene.out.tab
inst/extdata/L53_AGTCAA.ReadsPerGene.out.tab
inst/extdata/L54_AGTTCC.ReadsPerGene.out.tab
inst/extdata/L55_ATGTCA.ReadsPerGene.out.tab
inst/extdata/L56_CCGTCC.ReadsPerGene.out.tab
inst/extdata/L57_GTCCGC.ReadsPerGene.out.tab
inst/extdata/L66_GTGAAACG.ReadsPerGene.out.tab
inst/extdata/L67_GTGGCCTT.ReadsPerGene.out.tab
inst/extdata/L68_GTTTCGGA.ReadsPerGene.out.tab
inst/extdata/L69_CGTACGTA.ReadsPerGene.out.tab
inst/extdata/L70_GAGTGGAT.ReadsPerGene.out.tab
inst/extdata/SampleTable.txt
inst/extdata/dds.rda
inst/extdata/dmel-all-r6.17.rda
inst/extdata/read.counts.rda
inst/extdata/res.HighMLEpATP-HighMLEmATP.txt
inst/extdata/res.HighMLEpATP-Input.txt
inst/extdata/res.LowMLEpATP-Input.txt
inst/extdata/res.LowMLEpATP-LowMLEmATP.txt
inst/extdata/snoRNA_snopy.txt
man/getResults.Rd
man/makeCountTable.Rd
man/makeGOTable.Rd
man/plotDens.Rd
man/plotGOGraph.Rd
man/plotGObBubbles.Rd
man/plotLegend.Rd
man/plotLog2FC.Rd
man/plotReadStats.Rd
man/plottingMA.Rd
man/plottingMAold.Rd
man/plottingPCA.Rd
man/setupDDS.Rd
man/setupDDSwith3wayInteraction.Rd
man/setupDDSwithInteraction.Rd
