plotDensity: plotDensity

In ttriche/regulatoR: robust detection of regulatoRy associations between loci and features

Usage

plotDensity(x, minSep = 0.1, xlab = "Value", more = "", ...)

Arguments

x
minSep
xlab
more
...

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (x, minSep = 0.1, xlab = "Value", more = "", ...) 
{
    x <- x[!is.na(x)]
    res = clusterAndCollapse(x, minSep)
    means = unique(res$values)
    plot(density(x, adjust = 0.5), xlab = xlab, lty = 1, lwd = 2, 
        ..., main = paste0(res$retain, " components (dashed) at minSep=", 
            minSep, more))
    if (res$retain > 0) {
        for (i in seq_along(means)) abline(v = means[i], col = i + 
            2, lty = 3, lwd = 2)
        dens = density(res$values, adjust = 0.5)
        lines(dens$x, dens$y * (1.2/length(means)), lty = 3, 
            lwd = 2)
    }
  }

ttriche/regulatoR documentation built on June 1, 2019, 2:51 a.m.