predict_abundance: Predict taxon abundances at given values of an index

In tuv292/abx_idx: Modeling the Susceptibility of a Bacterial Community to Antibiotics

Predict taxon abundances at given values of an index

Description

Predict taxon abundances at given values of an index

Usage

predict_abundance(index_value, abundance, susceptibility)

Arguments

index_value	Value or values of the index at which to make predictions.
susceptibility	A character vector of antibiotic susceptibility, with values that are "susceptible", "resistant", or NA.
abundances	A vector of taxon abundances in a sample.

Value

A new vector of abundances if index_value has length 1. If index_value is a vector longer than 1, this function returns a matrix, where each column contains the predicted abundances.

tuv292/abx_idx documentation built on Jan. 12, 2023, 12:48 a.m.