weiss2021_data | R Documentation |
Example data from Weiss et al.
weiss2021_data
A data frame with the following columns:
The name of the sample
The taxonomic assignments from QIIME2. We removed any species-level taxa and blank taxa ("g__", etc.) from the assignments. Otherwise, the assignments are in the same format as they were when generated by the software.
The proportion of the lineage in the sample
The subject identifier
The group, either "Healthy" or "Sepsis"
The time window in which the sample was collected. The study window is
NA
for healthy subjects.
Weiss SL, Bittinger K, Lee JJ, Friedman ES, Mattei LM, Graham K, Zhang D, Bush J, Balamuth F, McGowan FX Jr, Bushman FD, Baldassano RN, Wu GD, Wallace DC, Collman RG. Decreased Intestinal Microbiome Diversity in Pediatric Sepsis: A Conceptual Framework for Intestinal Dysbiosis to Influence Immunometabolic Function. Crit Care Explor. 2021 Mar 17;3(3):e0360. doi: 10.1097/CCE.0000000000000360. PMID: 33786436; PMCID: PMC7994045.
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