build.network: Perform network inference.

In tuxette/internet3D: gamma-package for internet3D

Description

Perform network inference.

Usage

build.network(expr, ...)

## S3 method for class 'internet3D'
print(x, ...)

## S3 method for class 'internet3D'
summary(object, ...)

Arguments

expr	a n by d data matrix
...	options passed to the function set.options
x	a internet3D object
object	a internet3D object

Value

object of type internet3D with the following entries

• expr input expression dataset

• networks networks infered along the regularization path

• used.lambdas penalization parameters used along the regularization path

• n.edges number of edges of networks along the regularization path

• BIC BIC criteria (experimental) along the regularization path

• AIC AIC criteria (experimental) along the regularization path

• loglik log-likelihoods along the regularization path

• loglik.pen penalized log-likelihoods along the regularization path

• options internet3DOptions object with the options used for the inference

See Also

set.options and bootstrap.build

Examples

data(cancer)
# no constraint
res <- build.network(expr)
# constraints
res <- build.network(expr, 
                     first.list=matrix(c("AMFR","BTG3","BECNI","BTG3"),
                                       ncol=2, byrow=TRUE),
                     second.list=matrix(c("AMFR","E2F3"), ncol=2),
                     mu=1)
print(res)

tuxette/internet3D documentation built on May 8, 2019, 11:59 p.m.