jaccard: Compute Jaccard distance / index for given microbial profiles
In tvatanen/microbiomics: Microbiomics
Description
Usage
Arguments
Value
Author(s)
Description
This functions computes distance / similarity matrix based on microbial community profiles
given as input. Jaccard distance is based on Jaccard index, following the definition given
in wikipedia (https://en.wikipedia.org/wiki/Jaccard_index). Note, that this is different
from Jaccard index in vegdist function in package vegan.
Usage
1
Arguments
x
data frame or matrix containing microbial community profiles
return_index
set TRUE to return Jaccard Index instead of distance
Value
a dist object containing Jaccard distances / indeces
Author(s)
Tommi Vatanen <tommivat@gmail.com>
tvatanen/microbiomics documentation built on Sept. 27, 2019, 7:29 a.m.
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Description Usage Arguments Value Author(s)
Description
This functions computes distance / similarity matrix based on microbial community profiles given as input. Jaccard distance is based on Jaccard index, following the definition given in wikipedia (https://en.wikipedia.org/wiki/Jaccard_index). Note, that this is different from Jaccard index in vegdist function in package vegan.
Usage
1 |
Arguments
x |
data frame or matrix containing microbial community profiles |
return_index |
set TRUE to return Jaccard Index instead of distance |
Value
a dist object containing Jaccard distances / indeces
Author(s)
Tommi Vatanen <tommivat@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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