uc-bd2k/GREP2: GEO RNA-Seq Experiments Processing Pipeline
An R based pipeline to download and process Gene Expression Omnibus (GEO) RNA-seq data. For a given GEO series accession ID, this pipeline generates metadata, both gene and transcript level counts, and quality control (QC) report. This package is mainly developed to process the GEO RNA-seq datasets for the web platform GREIN. More details about GREP2 and GREIN can be found here <doi:10.1101/326223>.
Getting started
Browse package contents
Package details |
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| Maintainer | Naim Al Mahi <mahina@mail.uc.edu> |
| License | GPL-3 |
| Version | 1.0.2 |
| URL | https://github.com/uc-bd2k/GREP2 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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