uc-bd2k/GREP2: GEO RNA-Seq Experiments Processing Pipeline

An R based pipeline to download and process Gene Expression Omnibus (GEO) RNA-seq data. For a given GEO series accession ID, this pipeline generates metadata, both gene and transcript level counts, and quality control (QC) report. This package is mainly developed to process the GEO RNA-seq datasets for the web platform GREIN. More details about GREP2 and GREIN can be found here <doi:10.1101/326223>.

Getting started

Package details

MaintainerNaim Al Mahi <mahina@mail.uc.edu>
URL https://github.com/uc-bd2k/GREP2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
uc-bd2k/GREP2 documentation built on Oct. 29, 2019, 5:15 a.m.