get_metadata: Download metadata from GEO and SRA
In uc-bd2k/GREP2: GEO RNA-Seq Experiments Processing Pipeline
Description
Usage
Arguments
Value
Examples
Description
Download metadata from GEO and SRA
Usage
1
2
get_metadata(geo_series_acc, destdir, geo_only = FALSE,
download_method = "auto")
Arguments
geo_series_acc
GEO series accession ID.
destdir
directory where the metadata files will be saved.
geo_only
logical, whether to download GEO metadata only.
Default is FALSE. If TRUE, then SRA metadata will not be
downloaded.
download_method
download method for GEOquery.
See 'download.file' from R package utils
for details. Default is 'libcurl'.
Value
a list of GEO and SRA metadata.
Examples
1
2
get_metadata(geo_series_acc="GSE102170",destdir=tempdir(),
geo_only=TRUE,download_method="auto")
uc-bd2k/GREP2 documentation built on Oct. 29, 2019, 5:15 a.m.
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Description Usage Arguments Value Examples
Description
Download metadata from GEO and SRA
Usage
1 2 | get_metadata(geo_series_acc, destdir, geo_only = FALSE,
download_method = "auto")
|
Arguments
geo_series_acc |
GEO series accession ID. |
destdir |
directory where the metadata files will be saved. |
geo_only |
logical, whether to download GEO metadata only. Default is FALSE. If TRUE, then SRA metadata will not be downloaded. |
download_method |
download method for GEOquery.
See |
Value
a list of GEO and SRA metadata.
Examples
1 2 | get_metadata(geo_series_acc="GSE102170",destdir=tempdir(),
geo_only=TRUE,download_method="auto")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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