Files in uc-bd2k/GREP2

GEO RNA-Seq Experiments Processing Pipeline

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/build_index.R R/get_fastq.R R/get_metadata.R R/get_srr.R R/process_geo_rnaseq.R R/run_fastqc.R R/run_multiqc.R R/run_salmon.R R/run_tximport.R R/trim_fastq.R README.md

inst/CITATION

inst/extdata/NexteraPE-PE.fa

inst/extdata/SRR5890521_pass.fastq

inst/extdata/SRR5890521_transcripts_quant/SRR5890521_quant_new.sf

inst/extdata/TruSeq2-PE.fa

inst/extdata/TruSeq2-SE.fa

inst/extdata/TruSeq3-PE-2.fa

inst/extdata/TruSeq3-PE.fa

inst/extdata/TruSeq3-SE.fa

inst/java/trimmomatic-0.36.jar

java/trimmomatic-0.36.jar

man/build_index.Rd man/get_fastq.Rd man/get_metadata.Rd man/get_srr.Rd man/process_geo_rnaseq.Rd man/run_fastqc.Rd man/run_multiqc.Rd man/run_salmon.Rd man/run_tximport.Rd man/trim_fastq.Rd

vignettes/ref.bib

vignettes/vignette.Rmd

uc-bd2k/GREP2 documentation built on Oct. 29, 2019, 5:15 a.m.