GRgetDefs: GR metrics definitions
In uc-bd2k/GRmetrics: Calculate growth-rate inhibition (GR) metrics

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/GRgetDefs.R

Given a SummarizedExperiment object created by GRfit, this function returns a table with the definition of each GR metric and traditional metric that is calculated.

1	GRgetDefs(fitData)

fitData

a SummarizedExperiment object, generated by the GRfit function.

Given a SummarizedExperiment object created by GRfit, this function returns a table containing the definition of each GR metric, traditional metric, and goodness of fit measure in the object. This is simply a convenient accessor function, equivalent to rowData(fitData).

A table of definitions of GR metrics and traditional metrics

Nicholas Clark

To create the object needed for this function, see GRfit.

# Load Case A (example 1) input
data("inputCaseA")
head(inputCaseA)
# Run GRfit function with case = "A"
output1 = GRfit(inputData = inputCaseA,
groupingVariables = c('cell_line','treatment'))
defs = GRgetDefs(output1)
# See all definitions (some will be truncated)
## Not run: View(defs)
# See the first six descriptions
head(defs)
# Look at a specific definition
defs[15,]