GRgetMetrics: GR metrics

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/GRgetMetrics.R

Description

Given a SummarizedExperiment object created by GRfit, this function returns a table of GR metrics (as well as traditional metrics) for each experiment in the dataset.

Usage

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GRgetMetrics(fitData)

Arguments

fitData

a SummarizedExperiment object, generated by the GRfit function.

Details

Given a SummarizedExperiment object created by GRfit, this function returns a table of GR metrics and traditional metrics along with goodness of fit measures. It also identifies each fit as flat or sigmoidal. This is simply a convenient accessor function, equivalent to cbind(as.data.frame(colData(fitData)), as.data.frame(t(assay(fitData)))).

Value

A table with GR metrics and goodness of fit measures

Author(s)

Nicholas Clark

See Also

To create the object needed for this function, see GRfit.

Examples

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# Load Case A (example 1) input
data("inputCaseA")
head(inputCaseA)
# Run GRfit function with case = "A"
output1 = GRfit(inputData = inputCaseA,
groupingVariables = c('cell_line','treatment'))
metrics = GRgetMetrics(output1)
## Not run: View(metrics)
head(metrics)

uc-bd2k/GRmetrics documentation built on Nov. 11, 2020, 4:10 p.m.