GRgetMetrics: GR metrics
In uc-bd2k/GRmetrics: Calculate growth-rate inhibition (GR) metrics

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/GRgetMetrics.R

Given a SummarizedExperiment object created by GRfit, this function returns a table of GR metrics (as well as traditional metrics) for each experiment in the dataset.

1	GRgetMetrics(fitData)

fitData

a SummarizedExperiment object, generated by the GRfit function.

Given a SummarizedExperiment object created by GRfit, this function returns a table of GR metrics and traditional metrics along with goodness of fit measures. It also identifies each fit as flat or sigmoidal. This is simply a convenient accessor function, equivalent to cbind(as.data.frame(colData(fitData)), as.data.frame(t(assay(fitData)))).

A table with GR metrics and goodness of fit measures

Nicholas Clark

To create the object needed for this function, see GRfit.

# Load Case A (example 1) input
data("inputCaseA")
head(inputCaseA)
# Run GRfit function with case = "A"
output1 = GRfit(inputData = inputCaseA,
groupingVariables = c('cell_line','treatment'))
metrics = GRgetMetrics(output1)
## Not run: View(metrics)
head(metrics)