generate_mappings: The 'boilerplate' for this package's desired graph style

Description Usage Arguments Value Examples

Description

Generates an object that can be converted to a JSON file and subsequently applied to the graph for the markup specified by this package and the layout mirroring KEGG. Intended for use within cyto_vis

Usage

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generate_mappings(style_name, map_edge_width, edge_width_attribute, min_score,
  max_score)

Arguments

style_name

An argument to name style; when used inside of cyto_vis no name is needed

map_edge_width

A logical indicator; if FALSE no continuous mapping of edge width will be applied

edge_width_attribute

The attribute that will be used for edge width; if data is not added or the attribute is not part of the graphing information, the edge width will default to 1.

min_score

The minimum attribute value for the column used to map edge width

max_score

The maximum attribute value for the column used to map edge width

Value

A list that can be converted to a JSON file to apply desired style/layout in Cytoscape

Examples

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style.name = "myKEGGstyle"
mappings <- generate_mappings(style.name, FALSE)

uc-bd2k/KEGGlincs documentation built on May 3, 2019, 2:13 p.m.