path_genes_by_cell_type: See how many pathway gene knock-outs are available from data

Description Usage Arguments Value Examples

View source: R/path_genes_by_cell_type.R

Description

Check quantity of data across cell lines available from LINCS corresponding to the pathway of interest

Usage

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path_genes_by_cell_type(KEGG_mappings, pert_time = 96, get_KOs = FALSE,
  generate_plot = TRUE)

Arguments

KEGG_mappings

KEGG_mappings The data.frame object generated by the function expand_KEGG_mappings

pert_time

Choose from (6,24,48,96,120,144,168)

get_KOs

Logical indicator to have data frame returned

generate_plot

Logical indicator to generate histogram

Value

A plot depicting percentage of pathway genes knocked-out by cell line and a data frame object listing the genes [by cell line]

Examples

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p53_KGML <- get_KGML("hsa04115")
p53_KEGG_mappings <- expand_KEGG_mappings(p53_KGML)

path_genes_by_cell_type(p53_KEGG_mappings)

uc-bd2k/KEGGlincs documentation built on Dec. 8, 2017, 3:32 a.m.