Files in ucl-cssb/flopr
A package for the normalisation and calibration of flow cytometry and plate reader spectrophotometry data
.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/biotekCytationFunctions.R
R/biotekNeo2Functions.R
R/flowCoreMisc.R
R/flowCytometryFunctions.R
R/plateReaderFunctions.R
R/tecanInfiniteFunctions.R
R/tecanSparkFunctions.R
README.Rmd
README.md
examples/csv_save.png
examples/flow_cytometry/DATA/20191121/20191121_beads.fcs
examples/flow_cytometry/DATA/20191121/20191121_plate_layout.csv
examples/flow_cytometry/DATA/20191121/pMed_None_0_1.fcs
examples/flow_cytometry/DATA/20191121/pMed_None_0_10.fcs
examples/flow_cytometry/DATA/20191121/pMed_None_0_2.fcs
examples/flow_cytometry/DATA/20191121/pMed_None_0_3.fcs
examples/flow_cytometry/DATA/20191121/pMed_None_0_4.fcs
examples/flow_cytometry/DATA/20191121/pMed_None_0_5.fcs
examples/flow_cytometry/DATA/20191121/pMed_None_0_6.fcs
examples/flow_cytometry/DATA/20191121/pMed_None_0_7.fcs
examples/flow_cytometry/DATA/20191121/pMed_None_0_8.fcs
examples/flow_cytometry/DATA/20191121/pMed_None_0_9.fcs
examples/flow_cytometry/DATA/20191121/pNeg_None_0_1.fcs
examples/flow_cytometry/DATA/20191121/pNeg_None_0_2.fcs
examples/flow_cytometry/DATA/20191121/pNeg_None_0_3.fcs
examples/flow_cytometry/DATA/20191121/pNeg_None_0_4.fcs
examples/flow_cytometry/DATA/20191121/pNeg_None_0_5.fcs
examples/flow_cytometry/DATA/20191121/pNeg_None_0_6.fcs
examples/flow_cytometry/DATA/20191121/pNeg_None_0_7.fcs
examples/flow_cytometry/DATA/20191121/pNeg_None_0_8.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_1.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_10.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_11.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_12.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_2.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_3.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_4.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_5.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_6.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_7.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_8.fcs
examples/flow_cytometry/DATA/20191121/pStrong_None_0_9.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_1.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_10.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_11.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_12.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_1_processed.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_1_processed.pdf
examples/flow_cytometry/DATA/20191121/pWeak_None_0_2.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_3.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_4.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_5.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_7.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_8.fcs
examples/flow_cytometry/DATA/20191121/pWeak_None_0_9.fcs
examples/flow_cytometry/DATA/20191121_processed/20191121_beads_BL1-H_calibration.pdf
examples/flow_cytometry/DATA/20191121_processed/20191121_beads_singlet_beads.pdf
examples/flow_cytometry/DATA/20191121_processed/data_summary.csv
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_1.fcs
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_10.fcs
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_10_processed.pdf
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_1_processed.pdf
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_2.fcs
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_2_processed.pdf
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_3.fcs
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_3_processed.pdf
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_4.fcs
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_4_processed.pdf
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_5.fcs
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_5_processed.pdf
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_6.fcs
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_6_processed.pdf
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_7.fcs
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_7_processed.pdf
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_8.fcs
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_8_processed.pdf
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_9.fcs
examples/flow_cytometry/DATA/20191121_processed/pMed_None_0_9_processed.pdf
examples/plate_reader/biotek_cytation/231031_pr_calibration_lid.xlsx
examples/plate_reader/biotek_cytation/231031_pr_calibration_lid_parsed.csv
examples/plate_reader/biotek_cytation/231031_pr_calibration_lid_parsed_absorbance_cfs.pdf
examples/plate_reader/biotek_cytation/231031_pr_calibration_lid_parsed_cfs.csv
examples/plate_reader/biotek_cytation/231031_pr_calibration_lid_parsed_fluorescence_cfs.pdf
examples/plate_reader/biotek_cytation/231031_pr_calibration_membrane.xlsx
examples/plate_reader/biotek_cytation/231031_pr_calibration_membrane_parsed.csv
examples/plate_reader/biotek_cytation/231031_pr_calibration_membrane_parsed_absorbance_cfs.pdf
examples/plate_reader/biotek_cytation/231031_pr_calibration_membrane_parsed_cfs.csv
examples/plate_reader/biotek_cytation/231031_pr_calibration_membrane_parsed_fluorescence_cfs.pdf
examples/plate_reader/biotek_cytation/231031_pr_calibration_nolid.xlsx
examples/plate_reader/biotek_cytation/plate_layout.csv
examples/plate_reader/biotek_neo2/biotek-neo2_example_data.xlsx
examples/plate_reader/biotek_neo2/biotek-neo2_example_data_parsed.csv
examples/plate_reader/tecan_spark/191219_calibration_membrane.csv
examples/plate_reader/tecan_spark/191219_calibration_membrane_parsed.csv
examples/plate_reader/tecan_spark/191219_calibration_membrane_parsed_absorbance_cfs.pdf
examples/plate_reader/tecan_spark/191219_calibration_membrane_parsed_cfs.csv
examples/plate_reader/tecan_spark/191219_calibration_membrane_parsed_fluorescence_cfs.pdf
examples/plate_reader/tecan_spark/200228_example_data.csv
examples/plate_reader/tecan_spark/200228_example_data_parsed.csv
examples/plate_reader/tecan_spark/200228_example_data_parsed_GFP.pdf
examples/plate_reader/tecan_spark/200228_example_data_parsed_OD.pdf
examples/plate_reader/tecan_spark/200228_example_data_parsed_mCherry.pdf
examples/plate_reader/tecan_spark/200228_example_data_parsed_norm-curve_GFP.pdf
examples/plate_reader/tecan_spark/200228_example_data_parsed_norm-curve_mCherry.pdf
examples/plate_reader/tecan_spark/200228_example_data_parsed_processed.csv
examples/plate_reader/tecan_spark/200228_example_layout.csv
examples/plate_reader/tecan_spark/calibration_plate_layout.csv
flopr.Rproj
man/biotek_parse.Rd
man/calibrate_flu.Rd
man/calibrate_od.Rd
man/cytation_parse.Rd
man/ff_append_cols.Rd
man/flu_norm.Rd
man/generate_cfs.Rd
man/get_bacteria.Rd
man/get_calibration.Rd
man/get_singlets.Rd
man/infinite_parse.Rd
man/next_blank.Rd
man/next_blank_cell.Rd
man/next_blank_row.Rd
man/next_filled.Rd
man/next_filled_cell.Rd
man/next_filled_row.Rd
man/od_norm.Rd
man/plot_trimming.Rd
man/prep_flow_frame.Rd
man/process_fcs.Rd
man/process_fcs_dir.Rd
man/process_plate.Rd
man/sparkParse.Rd
man/spark_parse.Rd
man/summarise_data.Rd
man/to_mef.Rd
