Files in uclahs-cds/public-R-SeqKat
Detection of Kataegis
.Rbuildignore
.cicd-env
.github/workflows/R-CMD-check.yaml
.github/workflows/static-analysis.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/RcppExports.R
R/combine.table.R
R/final.score.R
R/get.context.R
R/get.exprobntcx.R
R/get.nucleotide.chunk.counts.R
R/get.pair.R
R/get.tn.R
R/get.toptn.R
R/get.trinucleotide.counts.R
R/seqkat.R
R/test.kataegis.R
README.md
exec/generate.trinucleotide.counts
inst/doc/vignette.R
inst/doc/vignette.Rmd
inst/doc/vignette.pdf
inst/extdata/length_hg19_chr.txt
inst/extdata/length_hg38_chr.txt
inst/extdata/length_hs37d5_chr.txt
inst/extdata/test/PD4120a-chr4-1-2000000_test_snvs.bed
inst/extdata/test/exprobntcx.rda
inst/extdata/test/final.score.rda
inst/extdata/test/length_hg19_chr_test.txt
inst/extdata/test/ref/chr1.fa
inst/extdata/test/ref/chr10.fa
inst/extdata/test/ref/chr11.fa
inst/extdata/test/ref/chr12.fa
inst/extdata/test/ref/chr13.fa
inst/extdata/test/ref/chr14.fa
inst/extdata/test/ref/chr15.fa
inst/extdata/test/ref/chr16.fa
inst/extdata/test/ref/chr17.fa
inst/extdata/test/ref/chr18.fa
inst/extdata/test/ref/chr19.fa
inst/extdata/test/ref/chr2.fa
inst/extdata/test/ref/chr20.fa
inst/extdata/test/ref/chr21.fa
inst/extdata/test/ref/chr22.fa
inst/extdata/test/ref/chr23.fa
inst/extdata/test/ref/chr24.fa
inst/extdata/test/ref/chr3.fa
inst/extdata/test/ref/chr4.fa
inst/extdata/test/ref/chr5.fa
inst/extdata/test/ref/chr6.fa
inst/extdata/test/ref/chr7.fa
inst/extdata/test/ref/chr8.fa
inst/extdata/test/ref/chr9.fa
inst/extdata/test/somatic.rda
inst/extdata/test/test.table.rda
inst/extdata/tn_count.txt
inst/extdata/trinucleotide_hg38_whole_genome.txt
man/combine.table.Rd
man/final.score.Rd
man/get.context.Rd
man/get.exprobntcx.Rd
man/get.nucleotide.chunk.counts.Rd
man/get.pair.Rd
man/get.tn.Rd
man/get.toptn.Rd
man/get.trinucleotide.counts.Rd
man/seqkat.Rd
man/test.kataegis.Rd
metadata.yaml
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/SeqKat_init.c
src/cget_nucleotide_chunk_counts.cpp
src/cget_trinucleotide_counts.cpp
src/cpp_get_context.cpp
tests/testthat.R
tests/testthat/test-seqkat.R
vignettes/vignette.Rmd
