get.trinucleotide.counts: Get Trinucleotide Counts

In uclahs-cds/public-R-SeqKat: Detection of Kataegis

Get Trinucleotide Counts

Description

Aggregates the total counts of each possible trinucleotide.

Usage

get.trinucleotide.counts(ref.dir, ref.name, output.dir)

Arguments

ref.dir	Path to a directory containing the reference genome.
ref.name	Name of the reference genome being used (i.e. hg19, GRCh38, etc)
output.dir	Path to a directory where output will be created.

Author(s)

Fan Fan

Fouad Yousif

Examples

## Not run: 
get.trinucleotide.counts(ref.dir, "hg19", tempdir());

## End(Not run)

uclahs-cds/public-R-SeqKat documentation built on May 31, 2024, 9:10 p.m.