get.tn: Get Trinucleotides

In uclahs-cds/public-R-SeqKat: Detection of Kataegis

Get Trinucleotides

Description

Count the frequencies of 32 trinucleotide in a region respectively

Usage

get.tn(chr, start.bp, end.bp, ref.dir)

Arguments

chr	Chromosome
start.bp	Starting position
end.bp	Ending position
ref.dir	Path to a directory containing the reference genome.

Author(s)

Fan Fan

Examples

example.ref.dir <- paste0(
	path.package("SeqKat"),
	"/extdata/test/ref/"
	);
get.tn(chr=4, start.bp=1, end.bp=-1, example.ref.dir)

uclahs-cds/public-R-SeqKat documentation built on May 31, 2024, 9:10 p.m.