get.context: Get Context

In uclahs-cds/public-R-SeqKat: Detection of Kataegis

Get Context

Description

Gets the 5' and 3' neighboring bases to the mutated base

Usage

get.context(file, start)

Arguments

file	Reference files directory
start	The position of the mutation gene

Value

The trinucleotide context.

Author(s)

Fouad Yousif

Fan Fan

Examples

example.ref.dir <- paste0(
	path.package("SeqKat"),
	"/extdata/test/ref/"
	);
get.context(file.path(example.ref.dir, 'chr4.fa'), c(1582933, 1611781))

uclahs-cds/public-R-SeqKat documentation built on May 31, 2024, 9:10 p.m.