projects/01-gait1/R/plotqqman.R
In ugcd/solarius: An R Interface to SOLAR
library(qqman)
load("resultsF11.Rdata")
dataP <- A$snpf[,c("SNP", "pSNP", "pos", "chr")]
names(dataP)[2] <- "P"
names(dataP)[3] <- "BP"
dataP$CHR <- as.numeric(dataP$chr)
pos <- which(is.na(dataP$CHR))
dataPP<- dataP[-pos,]
png("plotF11.png")
manhattan(dataPP)
dev.off()
png("qqF11.png")
qq(dataPP$P)
dev.off()
ugcd/solarius documentation built on May 3, 2019, 2:22 p.m.
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library(qqman)
load("resultsF11.Rdata")
dataP <- A$snpf[,c("SNP", "pSNP", "pos", "chr")]
names(dataP)[2] <- "P"
names(dataP)[3] <- "BP"
dataP$CHR <- as.numeric(dataP$chr)
pos <- which(is.na(dataP$CHR))
dataPP<- dataP[-pos,]
png("plotF11.png")
manhattan(dataPP)
dev.off()
png("qqF11.png")
qq(dataPP$P)
dev.off()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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