Files in ugcd/solarius
An R Interface to SOLAR
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/assoc.lib.R
R/classSolarAssoc.R
R/classSolarMultipoint.R
R/classSolarPolygenic.R
R/data.lib.R
R/datasets.R
R/files.lib.R
R/modelPar.R
R/multipoint.lib.R
R/package.R
R/plot.lib.R
R/polygenic.lib.R
R/solar.lib.R
R/solarAssoc.R
R/solarBayesAvg.R
R/solarMultipoint.R
R/solarMultivar.R
R/solarPar.R
R/solarPolyAssoc.R
R/solarPolygenic.R
R/support.lib.R
R/transforms.lib.R
README.md
TODO
data/dat30.RData
data/dat50.RData
data/datalist
docs/figures/solarius-models.png
inst/CITATION
inst/examples/example-asssoc-snpStats.R
inst/examples/example-fields.R
inst/examples/example-h2r-height-GenABEL.R
inst/examples/example-pedfile-snpStats.R
inst/examples/extdata-solarOutput.R
inst/examples/function-solarAssoc.R
inst/examples/function-solarBayesAvg.R
inst/examples/function-solarKinship2.R
inst/examples/function-solarMultivar.R
inst/examples/package-multic.R
inst/examples/plot-regression.R
inst/examples/solar-load.R
inst/examples/solar-mibd-incomplete.R
inst/examples/solar-multipoint-gait1.R
inst/examples/solar-multipoint.R
inst/extdata/solarAssoc/dat.snp
inst/extdata/solarAssoc/dat.snp1
inst/extdata/solarAssoc/dat.snp2
inst/extdata/solarAssoc/dat.snp3
inst/extdata/solarAssoc/dat.snp4
inst/extdata/solarAssoc/map.snp.1
inst/extdata/solarAssoc/map.snp.1.1
inst/extdata/solarAssoc/map.snp.1.2
inst/extdata/solarAssoc/map.snp.1.3
inst/extdata/solarAssoc/map.snp.1.4
inst/extdata/solarAssoc/ncdf/dat50.ncdf
inst/extdata/solarAssoc/ncdf/dat50.scan
inst/extdata/solarAssoc/ncdf/dat50.snp
inst/extdata/solarAssoc/plink/dat50.map
inst/extdata/solarAssoc/plink/dat50.ped
inst/extdata/solarAssoc/plink/dat50.raw
inst/extdata/solarAssoc/plink/dat50.tfam
inst/extdata/solarAssoc/plink/dat50.tped
inst/extdata/solarAssoc/snp.geno-list
inst/extdata/solarAssoc/snp.geno-list1
inst/extdata/solarAssoc/snp.geno-list2
inst/extdata/solarAssoc/snp.geno-list3
inst/extdata/solarAssoc/snp.geno-list4
inst/extdata/solarAssoc/snp.genocov
inst/extdata/solarAssoc/snp.genocov1
inst/extdata/solarAssoc/snp.genocov2
inst/extdata/solarAssoc/snp.genocov3
inst/extdata/solarAssoc/snp.genocov4
inst/extdata/solarOutput/pedindex.cde
inst/extdata/solarOutput/pedindex.out
inst/extdata/solarOutput/phi2.gz
inst/extdata/solarOutput/simulated.ped
inst/extdata/solarOutput/simulated.phen
inst/extdata/solarOutput/solarMibds/mibd.2.0.gz
inst/extdata/solarOutput/solarMibds/mibd.2.1.gz
inst/extdata/solarOutput/solarMibds/mibd.2.2.gz
inst/extdata/solarOutput/solarMibds/mibd.2.3.gz
inst/extdata/solarOutput/solarMibds/mibd.2.4.gz
inst/extdata/solarOutput/solarMibds/mibd.2.5.gz
inst/extdata/solarOutput/solarMibds/mibd.5.0.gz
inst/extdata/solarOutput/solarMibds/mibd.5.1.gz
inst/extdata/solarOutput/solarMibds/mibd.5.2.gz
inst/extdata/solarOutput/solarMibds/mibd.5.3.gz
inst/extdata/solarOutput/solarMibds/mibd.5.4.gz
inst/extdata/solarOutput/solarMibds/mibd.5.5.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.2.0.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.2.1.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.2.2.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.2.3.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.2.4.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.2.5.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.5.0.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.5.1.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.5.2.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.5.3.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.5.4.gz
inst/extdata/solarOutput/solarMibdsCsv/mibd.5.5.gz
inst/extdata/solarOutput/solarMibdsCsvIncomplete/mibd.5.0.gz
inst/extdata/solarOutput/solarMibdsCsvIncomplete/mibd.5.1.gz
inst/scripts/convert-dat50-netcdf.R
inst/scripts/convert-dat50-plink.R
inst/scripts/generate-genocovdat30.R
inst/tests/test-annotate.R
inst/tests/test-genocov.R
inst/tests/test-household.R
inst/tests/test-kinship.R
inst/tests/test-mgafiles.R
inst/tests/test-not-passed.R
inst/tests/test-plinkfiles.R
inst/tests/test-snplist.R
inst/tests/test-snpmap.R
inst/tests/test-solarAssoc-parallel.R
inst/tests/test-solarAssoc.R
inst/tests/test-solarMultipoint.R
inst/tests/test-solarPar.R
learn/.gitignore
learn/01-assoc-bivar/01-assoc-bivar.Rmd
learn/01-assoc-bivar/01-assoc-bivar.md
learn/02-poly-var-explained/02-poly-var-explained.Rmd
learn/03-command-fix/03-command-fix.Rmd
learn/03-command-fix/03-command-fix.md
learn/04-command-simqtl/04-command-simqtl.Rmd
learn/04-command-simqtl/04-command-simqtl.md
misc/scripts/01-corr-z-score.R
misc/scripts/02-corr-z-score-updated.R
notes/ascertainment.md
notes/assoc.md
notes/data-simulators.md
notes/datasets.md
notes/solar-bugs.md
notes/solar-sessions.md
notes/unrelated.md
projects/01-gait1/R/01-assoc-bmi.R
projects/01-gait1/R/02-gait1-snps.R
projects/01-gait1/R/03-check-gait1-maps.R
projects/01-gait1/R/04-F11.R
projects/01-gait1/R/05-linkage-univar.R
projects/01-gait1/R/06-linkage-biivar.R
projects/01-gait1/R/07-linkage-twopass.R
projects/01-gait1/R/ManhattanPlot.R
projects/01-gait1/R/annotateSignifSNPs.R
projects/01-gait1/R/plotqqman.R
projects/01-gait1/R/qqPlot.R
projects/02-compare-tools/reports/.gitignore
projects/02-compare-tools/reports/01-solar-lme4/01-solar-lme4.Rmd
vignettes/.gitignore
vignettes/gait.bib
vignettes/minimal.Rmd
vignettes/models-unused-code.Rmd
vignettes/modelsF11.Rmd
vignettes/modelsGAIT1.Rmd
vignettes/ref.bib
vignettes/tutorial.Rmd
