IDX_to_IDY: Wrapper functions to convert gene identifiers in org.Hs.eg.db...

In uhlitz/idconv: Conversion of gene IDs

Description

IDX_to_IDY converts ids from identifier X to identifier Y using AnnotationDbi

Usage

IDX_to_IDY(ids, from, to)

SYMBOL_to_ENTREZID(ids)

ENTREZID_to_SYMBOL(ids)

SYMBOL_to_ENSEMBL(ids)

ENSEMBL_to_SYMBOL(ids)

SYMBOL_to_REFSEQ(ids)

REFSEQ_to_SYMBOL(ids)

Arguments

ids	vector of source identifiers to be converted to target identifiers
from	source id type (e.g. "SYMBOL")
to	target id type (e.g. "ENSEMBL")

Value

A vector of converted identifiers with same length as input identifiers

Functions

• SYMBOL_to_ENTREZID: convert from SYMBOL to ENTREZID

• ENTREZID_to_SYMBOL: convert from ENTREZID to SYMBOL

• SYMBOL_to_ENSEMBL: convert from SYMBOL to ENSEMBL

• ENSEMBL_to_SYMBOL: convert from ENSEMBL to SYMBOL

• SYMBOL_to_REFSEQ: convert from SYMBOL to REFSEQ

• REFSEQ_to_SYMBOL: convert from REFSEQ to SYMBOL

Examples

SYMBOL_to_ENTREZID(c("EGR1", "FOS"))
ENTREZID_to_SYMBOL(c("1958", "2353"))
SYMBOL_to_ENSEMBL(c("EGR1", "FOS"))
ENSEMBL_to_SYMBOL(c("ENSG00000120738", "ENSG00000170345"))

uhlitz/idconv documentation built on May 3, 2019, 2:23 p.m.