Man pages for umccr/rock
Rocking R at UMCCR
| bedval2igv | Export BED values for IGV Viewing |
| cat_names | Names of awesome cats |
| circos_prep | Generate Perl Circos Plot Files |
| cnv2igv | Export CNV Segments for IGV Viewing |
| cnvkit_depth2igv | Write CNVkit cnr to wig |
| hello | Say Hello to My Little Friend(s) |
| pipe | Pipe operator |
| plot_circos | Generate Perl Circos Plot |
| plot_circos_baf | Generate Perl Circos PURPLE BAF Plot |
| plot_ideogram | Generate Ideogram Plot |
| plot_piano | Generate Piano Plot |
| prep_cnv_circos | Prepare CNV Segments for Perl Circos |
| prep_cnvkit_seg | Read CNVkit CNV Segments |
| prep_facets_seg | Read FACETS CNV Segments |
| prep_manta_vcf | Prepare Manta VCF for Circos |
| prep_manta_vcf2 | Prepare Manta VCF for Perl Circos |
| prep_purple_seg | Read PURPLE CNV Segments |
| prep_titan_seg | Read TitanCNA CNV Segments |
| prep_truth_seg | Read HCC2218 CNV Truth Set |
| read_cnv | Read CNVkit, FACETS, PURPLE or TitanCNA CNV Segments |
| read_manta_vcf | Read Manta VCF |
| rock-package | rock: Rocking R at UMCCR |
| samplot_commands | Prepare Samplot Commands from VCF |
| stamp | Print current timestamp |
| tidyeval | Tidy eval helpers |
