read_cnv: Read CNVkit, FACETS, PURPLE or TitanCNA CNV Segments
In umccr/rock: Rocking R at UMCCR
Description
Usage
Arguments
Value
Examples
Description
Reads the CNV segment TSV file output by CNVkit, FACETS, PURPLE or TitanCNA.
Usage
1
read_cnv(cnv)
Arguments
cnv
Path to CNV file.
Value
A cnv list containing a dataframe (tibble) with the following columns:
chrom: chromosome
start: start coordinate
end: end coordinate
tot_cn: total copy number estimate
Examples
1
2
fn <- system.file("extdata", "HCC2218_cnvkit-call.cns", package = "pebbles")
cnv <- read_cnv(fn)
umccr/rock documentation built on Oct. 11, 2020, 8:10 a.m.
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Description Usage Arguments Value Examples
Description
Reads the CNV segment TSV file output by CNVkit, FACETS, PURPLE or TitanCNA.
Usage
1 | read_cnv(cnv)
|
Arguments
cnv |
Path to CNV file. |
Value
A cnv list containing a dataframe (tibble) with the following columns:
chrom: chromosome
start: start coordinate
end: end coordinate
tot_cn: total copy number estimate
Examples
1 2 | fn <- system.file("extdata", "HCC2218_cnvkit-call.cns", package = "pebbles")
cnv <- read_cnv(fn)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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